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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16941336_16941455_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16941336 - 16941455
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAG
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAG
U12 Branch Point Sequence:
TGTAGGGTGACG
Flanking Amino Acid:
VAVELKALMGREVTFLKDCV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65
37.1
Major BPS
44.2
-0.3
1.7
46.8
46.7
Major PPT
85.4
0.8
0.8
79.9
32.1
Minor 5ss
30
-2.3
3.3
36.8
47.7
Minor BPS
36.2
-1.2
2.8
47.72
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008748
16937711 - 16949696
11986
ENSAPLT00000018137
16937711 - 16948103
10393