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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16944302_16946172_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16944302 - 16946172
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTCTCCTTCACC
Flanking Amino Acid:
PERPFLAILGGAKVQDKIQL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.9
41.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.5
0.6
0.8
70.2
35
Minor 5ss
36.1
-1.6
3.2
43.6
43.6
Minor BPS
67.7
0.54
1.8
73.91
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018137
16937711 - 16948103
10393
ENSAPLT00000008748
16937711 - 16949696
11986