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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16947976_16949655_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16947976 - 16949655
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTGTT
5'SS Class:
major
3'SS Sequence:
TTTCCCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTCCCCTAACA
Flanking Amino Acid:
GGGASLELLEGKVLPGVDAL
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
78.1
36.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
78.5
0.64
0.8
73.9
29.6
Minor 5ss
38.3
-1.3
3.4
50
46.3
Minor BPS
74.1
0.75
1.6
86.21
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008748
16937711 - 16949696
11986