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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16964423_16977509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16964423 - 16977509
Intron Length:
13087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATGTTTTCAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.9
0.58
0.9
73.6
36.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
53.3
-0
1.6
57
39.5

Associated Gene:

Gene:
AMOT
Ensembl Gene ID:
ENSAPLG00000008840
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009220
16963983 - 17012603
48621