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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16977672_16979038_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16977672 - 16979038
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAT
U12 Branch Point Sequence:
CAGGCGCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
67
0.42
1.2
67.3
37.8
Major PPT
77
0.61
0.7
76.4
25.6
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
41.3
-0.6
2.3
48.44
42.6

Associated Gene:

Gene:
AMOT
Ensembl Gene ID:
ENSAPLG00000008840
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031691
16972079 - 17012603
40525
ENSAPLT00000009220
16963983 - 17012603
48621