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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1700188_1700263_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1700188 - 1700263
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCGGCGGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGATCCTGACGG
Flanking Amino Acid:
DVVPVDSKRYRYVYHSSQWM
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
49.5
-0
1
37.5
39.8
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
44
-0.5
2
46.9
45.2

Associated Gene:

Gene:
TBX22
Ensembl Gene ID:
ENSAPLG00000010929
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011374
1699484 - 1704062
4579