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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1700439_1700516_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1700439 - 1700516
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CCCTGCCGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TGAGCGCGACCC
Flanking Amino Acid:
TNNELDDKGHIILQSMHKYK
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
69.8
39.5
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
62.9
0.29
0.9
55.9
33.8
Minor 5ss
35.3
-1.7
3.5
48.8
40.9
Minor BPS
34.8
-1.1
2.3
45.54
42.5

Associated Gene:

Gene:
TBX22
Ensembl Gene ID:
ENSAPLG00000010929
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011374
1699484 - 1704062
4579