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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17076836_17091677_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17076836 - 17091677
Intron Length:
14842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGTGCTTTATCC
Flanking Amino Acid:
NYRKPSGEKQVPTLMMDTQF
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
84.4
0.77
0.7
79.2
26.5
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
60.7
0.31
1.7
70.66
41

Associated Gene:

Gene:
TRPC5
Ensembl Gene ID:
ENSAPLG00000009198
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009595
17076437 - 17139805
63369