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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17092200_17108248_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17092200 - 17108248
Intron Length:
16049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CAGCCTGTAATA
Flanking Amino Acid:
KVAIKYHQKEFVAQPNCQQL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
80
0.75
1
78.6
31
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
46.6
-0.2
2
53.15
39.9

Associated Gene:

Gene:
TRPC5
Ensembl Gene ID:
ENSAPLG00000009198
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009595
17076437 - 17139805
63369