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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17115973_17120359_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17115973 - 17120359
Intron Length:
4387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
ATTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTTATTT
Flanking Amino Acid:
RCEKQNNAFSTLFETLQSLF
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.3
72.5
39.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.3
0.86
0.7
86.1
27.6
Minor 5ss
41
-1
3.1
55.7
42.1
Minor BPS
48.6
-0
2
66.59
45.3

Associated Gene:

Gene:
TRPC5
Ensembl Gene ID:
ENSAPLG00000009198
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009595
17076437 - 17139805
63369