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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17136398_17136581_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17136398 - 17136581
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TGTTGGGTAACA
Flanking Amino Acid:
KRHENLKTFTERHADNLIQN
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
61.9
42.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
85.8
0.81
0.8
80.7
31.3
Minor 5ss
34.8
-1.7
3.2
48.7
41.5
Minor BPS
44.5
-0.4
2.8
67.6
44.9

Associated Gene:

Gene:
TRPC5
Ensembl Gene ID:
ENSAPLG00000009198
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009595
17076437 - 17139805
63369