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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17138375_17139070_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17138375 - 17139070
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGGCACTCATTT
Flanking Amino Acid:
NEGLTEENFKELKQDISSFR
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
68.6
0.42
0.8
61.1
35.1
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
44.2
-0.3
1.9
59.76
43.4

Associated Gene:

Gene:
TRPC5
Ensembl Gene ID:
ENSAPLG00000009198
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009595
17076437 - 17139805
63369