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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17153234_17154026_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17153234 - 17154026
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCAAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTTCCCCAAAA
Flanking Amino Acid:
LQYYFNLGLQYYHQSYWHSM
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
59.8
0.22
1.1
61.7
32.9
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
58.9
0.28
2
78.36
37.5

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039677
17151658 - 17165997
14340
ENSAPLT00000027705
17151658 - 17176155
24498
ENSAPLT00000010363
17151658 - 17176155
24498