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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17154068_17159283_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17154068 - 17159283
Intron Length:
5216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
CCTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTCCTTTAATT
Flanking Amino Acid:
CDPSGNDLPRDTKVLQYYFN
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.1
0.7
0.8
78
34
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
77.2
0.93
1.1
86.21
33.4

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039677
17151658 - 17165997
14340
ENSAPLT00000027705
17151658 - 17176155
24498
ENSAPLT00000010363
17151658 - 17176155
24498