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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17160912_17161950_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17160912 - 17161950
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GATTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GTGTAATGAATG
Flanking Amino Acid:
FSSAEPTANLVMVNSAVISN
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
67.7
0.44
1
58
38.9
Major PPT
83
0.74
0.9
77
36.8
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
45.6
-0.4
1.9
51.6
42.4

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039677
17151658 - 17165997
14340