Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17162007_17162138_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17162007 - 17162138

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

CTTCAGTTAATC

Flanking Amino Acid:

FHEDFLYAPTDPDCGTAAVF

Intron Amino Acid Position:

606

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.6

92.3

16.1

Major BPS

85.7

0.89

0.8

22.2

Major PPT

72.6

0.51

62.5

43.1

Minor 5ss

-1.7

2.7

41.8

44.8

Minor BPS

48.8

-0.1

2.2

64.53

41.3

Associated Gene:

Gene:

ALG13

Ensembl Gene ID:

ENSAPLG00000009945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010363

17151658 - 17176155

24498

ENSAPLT00000027705

17151658 - 17176155

24498