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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17164860_17165071_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17164860 - 17165071
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGATTCTTAACC
Flanking Amino Acid:
QSYDNFSCRSRSYSRSRRQM
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.6
0.53
1
74.1
34.3
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
79.3
0.9
1.1
79.93
34.4

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010363
17151658 - 17176155
24498