Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17166065_17166765_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17166065 - 17166765

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATCCTTGCAGT

Flanking Amino Acid:

VTVFIEELAEKHTVPLANLK

Intron Amino Acid Position:

337

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

80.7

33.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.7

0.58

0.9

69.9

35.6

Minor 5ss

42.8

-0.8

2.9

40.7

Minor BPS

45.5

-0.2

2.1

67.34

43.3

Associated Gene:

Gene:

ALG13

Ensembl Gene ID:

ENSAPLG00000009945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027705

17151658 - 17176155

24498

ENSAPLT00000010363

17151658 - 17176155

24498