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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17171024_17171355_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17171024 - 17171355
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTG
5'SS Class:
major
3'SS Sequence:
TTGATTTGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
QFQANAAICQAVLYEILYKD
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.1
40.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.6
0.6
1
69.3
45.9
Minor 5ss
42.7
-0.8
2.9
49.4
46.9
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027705
17151658 - 17176155
24498
ENSAPLT00000010363
17151658 - 17176155
24498