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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17171438_17172846_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17171438 - 17172846
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTAAAAT
Flanking Amino Acid:
YATDNGFEDKILLCCSGNGH
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.2
0.7
0.9
73.4
41.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
54.7
0.23
1.7
72.15
38.8

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027705
17151658 - 17176155
24498
ENSAPLT00000010363
17151658 - 17176155
24498