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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17173801_17174416_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17173801 - 17174416
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AACTTCCTAATT
Flanking Amino Acid:
KYLERLGDPKESAGQLEISA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
68.9
0.43
1
65.2
40.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
58.1
0.33
1.7
71.79
39.3

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010363
17151658 - 17176155
24498
ENSAPLT00000027705
17151658 - 17176155
24498