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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17175822_17176014_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17175822 - 17176014
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SCLFRAISEQLFSCQIHHME
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
64
42.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.7
-1.6
3.5
47.1
48.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ALG13
Ensembl Gene ID:
ENSAPLG00000009945
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027705
17151658 - 17176155
24498
ENSAPLT00000010363
17151658 - 17176155
24498