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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17181773_17181981_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17181773 - 17181981
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACCTG
5'SS Class:
major
3'SS Sequence:
GCTTCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGTAG
U12 Branch Point Sequence:
GTGCTCGTAGTG
Flanking Amino Acid:
QRADLVISHAGAGSCLETLE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.9
47.7
Major BPS
42.2
-0.4
1.6
40.7
42
Major PPT
75.7
0.58
0.8
70.1
30.8
Minor 5ss
39.4
-1.2
3.5
55.3
48.9
Minor BPS
41.4
-0.7
2.1
44.75
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010634
17179653 - 17182428
2776