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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17220454_17236653_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17220454 - 17236653
Intron Length:
16200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
83.9
0.76
0.7
81.9
22.9
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
DCX
Ensembl Gene ID:
ENSAPLG00000010331
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010765
17220226 - 17309412
89187