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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17236861_17238404_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17236861 - 17238404
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
GTCCCCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
67.8
0.44
1
75
30.1
Major PPT
74.9
0.56
0.9
73.2
31.7
Minor 5ss
30.1
-2.3
2.6
34.1
41.4
Minor BPS
61.3
0.35
1.8
69.6
42.5

Associated Gene:

Gene:
DCX
Ensembl Gene ID:
ENSAPLG00000010331
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010765
17220226 - 17309412
89187