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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1724762_1725440_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1724762 - 1725440
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TACACTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTGTTTTACAC
Flanking Amino Acid:
VGTSVASAEQDELSQRLARL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
33.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.9
0.58
0.9
69.5
36.3
Minor 5ss
40.5
-1.1
2.7
50.4
46
Minor BPS
51.1
0.01
1.8
66.32
39.9

Associated Gene:

Gene:
CHMP1B
Ensembl Gene ID:
ENSAPLG00000010677
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011143
1724067 - 1731263
7197