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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17249228_17290762_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17249228 - 17290762
Intron Length:
41535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAAAAATAAAA
Flanking Amino Acid:
KKLYTLDGKQVTCLHDFFGD
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
75.2
0.57
0.8
69.7
31.1
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
43.2
-0.5
2
58.52
39.5

Associated Gene:

Gene:
DCX
Ensembl Gene ID:
ENSAPLG00000010331
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010765
17220226 - 17309412
89187