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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1725514_1726268_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1725514 - 1726268
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
CCATTAACTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCCCATTAACT
Flanking Amino Acid:
MLLQEMADEAGLDLNMELPQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
74.1
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
66
0.36
0.9
59.1
35.8
Minor 5ss
33.2
-1.9
2.9
33
42.2
Minor BPS
72.3
0.78
1.6
86.99
38.2

Associated Gene:

Gene:
CHMP1B
Ensembl Gene ID:
ENSAPLG00000010677
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011143
1724067 - 1731263
7197