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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1726313_1727337_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1726313 - 1727337
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TACAACTGAATG
Flanking Amino Acid:
SNTTTLTTPQNQVDMLLQEM
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
0.9
74.5
35.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
83.4
0.75
0.7
77.1
31.6
Minor 5ss
34.6
-1.8
2.9
40.8
39.3
Minor BPS
47.8
-0.3
1.7
51.52
42.5

Associated Gene:

Gene:
CHMP1B
Ensembl Gene ID:
ENSAPLG00000010677
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011143
1724067 - 1731263
7197