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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17294942_17307185_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17294942 - 17307185
Intron Length:
12244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCATC
5'SS Class:
major
3'SS Sequence:
TACTTTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
TCTGTCTTACTT
Flanking Amino Acid:
TRRSKSPADSANGTSSSQLS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
76.2
39.9
Major BPS
67
0.42
1.1
58
38.5
Major PPT
75.9
0.58
1
72.4
37.5
Minor 5ss
49.5
-0
2.6
69.3
41.4
Minor BPS
58.6
0.35
1.7
74.4
43.5

Associated Gene:

Gene:
DCX
Ensembl Gene ID:
ENSAPLG00000010331
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010765
17220226 - 17309412
89187