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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17332359_17339287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17332359 - 17339287
Intron Length:
6929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.5
0.64
0.9
74
36.6
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
62.6
0.26
1.7
66.59
42.2

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030802
17331494 - 17389000
57507