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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17338863_17339287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17338863 - 17339287
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTATTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTG
Flanking Amino Acid:
WKSTPEFSPFYTGRKGNTSL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
67
33.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.5
0.64
0.9
74
36.6
Minor 5ss
29.5
-2.4
3.2
40.8
45.4
Minor BPS
62.6
0.26
1.7
66.59
42.2

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010805
17337927 - 17389744
51818