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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17339343_17340187_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17339343 - 17340187
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATTTTACCT
Flanking Amino Acid:
SLTRSRKGLQKQKEMSSSVQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.7
0.49
0.9
66.1
39.7
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
58.6
0.35
1.7
75.45
41.9

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030802
17331494 - 17389000
57507
ENSAPLT00000010805
17337927 - 17389744
51818