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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17367293_17367776_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17367293 - 17367776
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CATATTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTGCATATTT
Flanking Amino Acid:
LALREPLWQQVIPDFEEQEW
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79
0.65
0.9
76.6
37
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
50.9
0.11
2.2
80.67
41.5

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036729
17357741 - 17389000
31260
ENSAPLT00000030802
17331494 - 17389000
57507
ENSAPLT00000010805
17337927 - 17389744
51818