About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17372958_17374716_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17372958 - 17374716
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TTTGTTTTGGTT
Flanking Amino Acid:
KKEWNGAWSDNSEEWKKVSN
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
82.2
0.73
0.8
74.3
36.5
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036729
17357741 - 17389000
31260
ENSAPLT00000030802
17331494 - 17389000
57507
ENSAPLT00000010805
17337927 - 17389744
51818