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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17380750_17381397_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17380750 - 17381397
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGC
5'SS Class:
major
3'SS Sequence:
TTTGATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCTTTGATT
Flanking Amino Acid:
RLFTDVPSKLRELTDDKPKM
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.2
40.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
87.3
0.84
0.8
84.8
35.4
Minor 5ss
39.5
-1.2
3
53.6
43.4
Minor BPS
72.8
0.8
1.3
86.34
34.1

Associated Gene:

Gene:
CAPN6
Ensembl Gene ID:
ENSAPLG00000010358
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036729
17357741 - 17389000
31260
ENSAPLT00000030802
17331494 - 17389000
57507
ENSAPLT00000010805
17337927 - 17389744
51818