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Intron Name: Anas_platyrhynchos_platyrhynchos_10_17381520_17388530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17381520 - 17388530

Intron Length:

7011

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTGTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAC

U12 Branch Point Sequence:

TGTGTCCTAACG

Flanking Amino Acid:

EGLQKQDRSGGADPYVLVKC

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

83.2

28.5

Major BPS

0.55

71.8

31.4

Major PPT

70.2

0.45

61.4

44.6

Minor 5ss

36.4

-1.5

3.3

45.9

43.7

Minor BPS

55.2

0.03

1.9

64.41

43.3

Associated Gene:

Gene:

CAPN6

Ensembl Gene ID:

ENSAPLG00000010358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036729

17357741 - 17389000

31260

ENSAPLT00000030802

17331494 - 17389000

57507

ENSAPLT00000010805

17337927 - 17389744

51818