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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17404799_17405933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17404799 - 17405933
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGGAAAGTAATG
Flanking Amino Acid:
RRGSAKELLQHPFLKLAKPL
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
73.4
0.53
1
72.1
37.9
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
38.7
-1
2.2
43.08
42

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032218
17404709 - 17439915
35207
ENSAPLT00000019294
17404709 - 17439915
35207
ENSAPLT00000011457
17404709 - 17439915
35207