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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17412295_17413355_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17412295 - 17413355
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTATCTCAAAG
Flanking Amino Acid:
KNPNIVNYLDSYLVGDELWV
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
55.7
0.04
1.8
65.7
41.7

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019294
17404709 - 17439915
35207
ENSAPLT00000011457
17404709 - 17439915
35207
ENSAPLT00000032218
17404709 - 17439915
35207