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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17413469_17415495_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17413469 - 17415495
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACGTTAATG
Flanking Amino Acid:
TAIDIATGQEVAIKQMNLQQ
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.8
0.45
0.9
66.2
40.2
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
54.2
-0
2.2
63.64
44.7

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032218
17404709 - 17439915
35207
ENSAPLT00000019294
17404709 - 17439915
35207
ENSAPLT00000011457
17404709 - 17439915
35207