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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17419026_17423773_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17419026 - 17423773
Intron Length:
4748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCATCTTTAATT
Flanking Amino Acid:
MTDEEILEKLRSIVSVGDPK
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
75.7
40.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
41.9
-0.9
3.1
56.2
42.2
Minor BPS
72.7
0.79
1.2
77.22
39.7

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011457
17404709 - 17439915
35207
ENSAPLT00000032218
17404709 - 17439915
35207
ENSAPLT00000019294
17404709 - 17439915
35207