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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17425118_17427596_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17425118 - 17427596
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TGTCTGTCCACA
Flanking Amino Acid:
AHGYIEAHPSSTKTASEPPL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.6
38.9
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
74.9
0.56
0.9
68.4
37.4
Minor 5ss
31.3
-2.1
3.3
40.9
45.3
Minor BPS
41.1
-0.7
2.4
57.33
42

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032218
17404709 - 17439915
35207
ENSAPLT00000019294
17404709 - 17439915
35207
ENSAPLT00000011457
17404709 - 17439915
35207