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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17429389_17434076_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17429389 - 17434076
Intron Length:
4688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTGGCATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTAAATTAACA
Flanking Amino Acid:
GFDAVTGEFTGIPEQWARLL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73.5
0.53
1
65.9
40
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
57.2
0.22
1.9
70.68
40.9

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011457
17404709 - 17439915
35207