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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17434178_17439718_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17434178 - 17439718
Intron Length:
5541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
GTTTTGCCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TGCATGTTAACG
Flanking Amino Acid:
RSIFPGGGDKTNKKKEKERP
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
71.8
34.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
71.1
0.47
0.9
62.8
39.7
Minor 5ss
39.5
-1.2
3.5
55
43.9
Minor BPS
48.6
-0.2
2.2
56.12
45.2

Associated Gene:

Gene:
PAK3
Ensembl Gene ID:
ENSAPLG00000010969
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019294
17404709 - 17439915
35207