About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17530780_17532280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17530780 - 17532280
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTGGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATTCATAACT
Flanking Amino Acid:
VDGGKLEQVKHSDTYCVFQD
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.3
0.64
0.9
71.2
38.5
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
67.3
0.62
1.6
81.43
39.9

Associated Gene:

Gene:
CHRDL1
Ensembl Gene ID:
ENSAPLG00000011574
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012124
17530633 - 17568862
38230