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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17560511_17563797_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17560511 - 17563797
Intron Length:
3287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
VINNKHKHGRVCVSNGKTYS
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
87.8
0.85
0.6
84.4
23.4
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
CHRDL1
Ensembl Gene ID:
ENSAPLG00000011574
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012124
17530633 - 17568862
38230
ENSAPLT00000030083
17531542 - 17568472
36931