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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17624097_17624191_R

Intron Information:

Intron Rank:
133680
Intron Class:
major
Intron Phase:
Intron Coordinates:
17624097 - 17624191
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCTAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.7
0.49
0.9
66.7
34.2
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
48.7
-0
2.1
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019179
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033148
17623954 - 17633125
9172