About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17625836_17626368_R

Intron Information:

Intron Rank:
133682
Intron Class:
major
Intron Phase:
Intron Coordinates:
17625836 - 17626368
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
45.2
-0.5
3
65.7
45.3
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019179
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033148
17623954 - 17633125
9172