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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17625836_17632497_R

Intron Information:

Intron Rank:
133679
Intron Class:
major
Intron Phase:
Intron Coordinates:
17625836 - 17632497
Intron Length:
6662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019179
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032326
17625789 - 17633125
7337