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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_17626521_17632497_R

Intron Information:

Intron Rank:
133683
Intron Class:
major
Intron Phase:
Intron Coordinates:
17626521 - 17632497
Intron Length:
5977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TGTCTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTGATGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
73
0.52
0.9
65.3
41.1
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
48.7
-0.1
2.1
65.64
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019179
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033148
17623954 - 17633125
9172